| summary.permax {permax} | R Documentation |
Finds and prints the most significant genes in the output of permax
summary.permax(object, data, nl=25, nr=25, dig=3, ...)
object |
A dataframe of class permax (created by permax)
|
data |
The data matrix used as input to permax. If given, the rows of d corresponding to the most significant genes will also be printed. |
nl |
The nl most significant genes in the lower tail will be printed |
nr |
The nr most significant genes in the upper tail will be printed |
dig |
Number of significant digits in the printed output (roughly)
Returns a list with components lower giving the row.names
of object
corresponding to the nl most significant genes in the upper tail, and
upper giving the nr most significant genes in the upper
tail. |
... |
Supplied for compatibility but not used.
If d is given, it must be a data frame with row.names(d) corresponding
to row.names(object), or a matrix with dimnames(d)[[1]]
corresponding to row.names(object).
The purpose of including d is primarily to print the
rows of the original data corresponding to the most significant
statistics.
permax
# An example is given in the permax help file