summary.ripple {qtl}R Documentation

Print summary of ripple results

Description

Print marker orders, from the output of the function ripple, for which the likelihood is within some cutoff of the initial order.

Usage

summary.ripple(object, lod.cutoff=1, ...)

Arguments

object An object of class ripple, the output of the function ripple.
lod.cutoff Only marker orders with LOD score (relative to the initial order) above the negative of this cutoff will be displayed.
... Ignored at this point.

Value

An object of class summary.ripple, whose rows correspond to marker orders with likelihood within some cutoff of the initial order. If no marker order, other than the initial one, has likelihood within the specified range, the initial and next-best orders are returned.

Author(s)

Karl W Broman, kbroman@jhsph.edu
http://biosun01.biostat.jhsph.edu/~kbroman/software/qtl.html

See Also

ripple, est.map, est.rf

Examples

data(fake.f2)
output <- ripple(fake.f2,7,2)
summary(output,2)
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