summary.scanone {qtl}R Documentation

Print summary of the scanone output

Description

Print the rows of the output from the function scanone that correspond to the maximum LOD for each chromosome.

Usage

summary.scanone(object,threshold=0,...)

Arguments

object An object of class scanone, the output of the function scanone. This is a data.frame whose first column is the chromosome number and third column is the LOD score.
threshold Only peaks with LOD score above this value will be returned.
... Ignored at this point.

Value

An object of class summary.scanone, to be printed by print.summary.scanone. This is a data.frame with one row per chromosome, that at which the LOD score is a maximum.

Author(s)

Karl W Broman, kbroman@jhsph.edu
http://biosun01.biostat.jhsph.edu/~kbroman/software/qtl.html

See Also

scanone, plot.scanone, vbscan

Examples

data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2,step=1,off.end=5)
output1 <- scanone(fake.f2,method="im")
summary(output1)
summary(output1,3)
[Package Contents]